Invasion_PGF module¶
Introduction¶
Invasion_PGF is a Python package for applying Probability Generating Functions [PGFs] to invasive processes, with an emphasis on the early spread of infectious disease.
The functions are based on the tutorial
A tutorial on the use of probability generating functions in infectious disease modeling
Please cite the tutorial if using these algorithms.
Functions (click on function name for full documentation)¶
Discrete time functions¶
R0 |
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extinction_prob |
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active_infections |
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completed_infections |
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active_and_completed |
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final_sizes |
Continuous-time functions¶
cts_time_R0 |
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cts_time_extinction_prob |
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cts_time_active_infections |
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cts_time_completed_infections |
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cts_time_active_and_completed |
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cts_time_final_sizes |